Index of sequence analysis tools interfaced at the Pasteur
Institute
All sequence analysis tools are available in two versions. The
simplified interface for each program allows the running under its
default settings, while the full version allows the modification of
all settings.On line help and documentation are avaimable in most
cases.
Alphabetical list of available sequence analysis tools
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
aconvert-simple
aconvert
addquart-simple
addquart
align2model-simple
align2model
alignfit-simple
alignfit
alistat-simple
alistat
amps-simple
amps
antigenic-simple
antigenic
assp-simple
assp
avestruc-simple
avestruc
backtranseq-simple
backtranseq
bambe-simple
bambe
banana-simple
banana
bionj-simple
bionj
bl2seq-simple
bl2seq
blast-simple
blast
blast2-simple
blast2
blast2cours-simple
blast2cours
blast2html-simple
blast2html
blastcours-simple
blastcours
blastwu-simple
blastwu
blastwucours-simple
blastwucours
blimps-simple
blimps
blimps_block-simple
blimps_block
blimps_matrix-simple
blimps_matrix
boxshade-simple
boxshade
btwisted-simple
btwisted
build_imm-simple
build_imm
buildmodel-simple
buildmodel
cap-simple
cap
cds-simple
cds
chaos-simple
chaos
checktrans-simple
checktrans
chips-simple
chips
cirdna-simple
cirdna
clustalw-simple
clustalw
clustalw_convert-simple
clustalw_convert
codcmp-simple
codcmp
codnocod-simple
codnocod
codontree-simple
codontree
codonw-simple
codonw
comalign-simple
comalign
combat-simple
combat
complex-simple
complex
compseq-simple
compseq
con_filter-simple
con_filter
confmat-simple
confmat
consense-simple
consense
consensus-simple
consensus
cpgplot-simple
cpgplot
cpgreport-simple
cpgreport
CSR-simple
CSR
cusp-simple
cusp
cutseq-simple
cutseq
dan-simple
dan
dca-simple
dca
demofeatures-simple
demofeatures
descseq-simple
descseq
dialign2-simple
dialign2
diffseq-simple
diffseq
digest-simple
digest
distquart-simple
distquart
dnadist-simple
dnadist
dnapars-simple
dnapars
dotmatcher-simple
dotmatcher
dotpath-simple
dotpath
dottup-simple
dottup
drawgram-simple
drawgram
drawpyr-simple
drawpyr
drawtree-simple
drawtree
dreg-simple
dreg
dsc-simple
dsc
dssp-simple
dssp
dstamp-simple
dstamp
echo-simple
efetch-simple
efetch
einverted-simple
einverted
emma-simple
emma
emowse-simple
emowse
entrails-simple
entrails
environ-simple
environ
equicktandem-simple
equicktandem
est2genome-simple
est2genome
etandem-simple
etandem
extractseq-simple
extractseq
fasta-simple
fasta
fastacours-simple
fastacours
fastdnaml-simple
fastdnaml
fastrna-simple
fastrna
findkm-simple
findkm
fitch-simple
fitch
flinqs-simple
flinqs
fmtseq-simple
fmtseq
freak-simple
freak
full_run-simple
full_run
fuzznuc-simple
fuzznuc
fuzzpro-simple
fuzzpro
fuzztran-simple
fuzztran
garnier-simple
garnier
gb2xml-simple
gb2xml
geecee-simple
geecee
genemark-simple
genemark
genscan-simple
genscan
getblock-simple
getblock
getorf-simple
getorf
gff2ps-simple
gff2ps
gibbs-simple
gibbs
gibbs_scan-simple
gibbs_scan
glimmer-simple
glimmer
glimmer_extract-simple
glimmer_extract
grailclnt-simple
grailclnt
gruppi-simple
gruppi
helixturnhelix-simple
helixturnhelix
hmm_convert-simple
hmm_convert
hmm_search-simple
hmm_search
hmma-simple
hmma
hmmalign-simple
hmmalign
hmmb-simple
hmmb
hmmbuild-simple
hmmbuild
hmmcalibrate-simple
hmmcalibrate
hmmconvert-simple
hmmconvert
hmmemit-simple
hmmemit
hmmer2sam-simple
hmmer2sam
hmmfetch-simple
hmmfetch
hmmpfam-simple
hmmpfam
hmmscore-simple
hmmscore
hmmsearch-simple
hmmsearch
hmmt-simple
hmmt
homology-simple
homology
html4blast-simple
html4blast
iep-simple
iep
infoseq-simple
infoseq
isochore-simple
isochore
kitsch-simple
kitsch
lassap-simple
lassap
lgicsearch-simple
lgicsearch
lindna-simple
lindna
loadseq-simple
loadseq
long_orfs-simple
long_orfs
lspcalc_prosite-simple
lspcalc_prosite
lspcalc_seqdb-simple
lspcalc_seqdb
lspcalc_seqseq-simple
lspcalc_seqseq
lspread_prosite-simple
lspread_prosite
lspread_seqdb-simple
lspread_seqdb
lspread_seqseq-simple
lspread_seqseq
lvb-simple
lvb
makehist-simple
makehist
map-simple
map
maskfeat-simple
maskfeat
maskseq-simple
maskseq
matcher-simple
matcher
megamerger-simple
megamerger
melting-simple
melting
merger-simple
merger
mfold-simple
mfold
modelfromalign-simple
modelfromalign
molphy-simple
molphy
morgan-simple
morgan
most-simple
most
msa-simple
msa
msbar-simple
msbar
mse-simple
mse
mspcrunch-simple
mspcrunch
mview_alig-simple
mview_alig
mview_blast-simple
mview_blast
needle-simple
needle
neighbor-simple
neighbor
newcpgreport-simple
newcpgreport
newcpgseek-simple
newcpgseek
newseq-simple
newseq
nnssp-simple
nnssp
noreturn-simple
noreturn
nthseq-simple
nthseq
octanol-simple
octanol
oddcomp-simple
oddcomp
palindrome-simple
palindrome
pam-simple
pam
parciquart-simple
parciquart
pasteseq-simple
pasteseq
patmatdb-simple
patmatdb
patmatmotifs-simple
patmatmotifs
patmattest-simple
patmattest
patser-simple
patser
pdbc-simple
pdbc
pdbseq-simple
pdbseq
pepcoil-simple
pepcoil
pepinfo-simple
pepinfo
pepnet-simple
pepnet
pepstats-simple
pepstats
pepwheel-simple
pepwheel
pepwindow-simple
pepwindow
pepwindowall-simple
pepwindowall
pestfind-simple
pestfind
pftools-simple
pftools
phiblast-simple
phiblast
plotcon-simple
plotcon
plotorf-simple
plotorf
plplottest-simple
plplottest
plsearch-simple
plsearch
polydot-simple
polydot
postwise-simple
postwise
pratt-simple
pratt
predator-simple
predator
preg-simple
preg
prettyalign-simple
prettyalign
prettyplot-simple
prettyplot
prettyseq-simple
prettyseq
prima-simple
prima
primersearch-simple
primersearch
primo-simple
primo
prodom-simple
prodom
profit-simple
profit
prophecy-simple
prophecy
prophet-simple
prophet
prosearch-simple
prosearch
protal2dna-simple
protal2dna
protdist-simple
protdist
proteinmotifsearch-simple
proteinmotifsearch
protpars-simple
protpars
pscan-simple
pscan
psort2-simple
psort2
puzzle-simple
puzzle
pyramids-simple
pyramids
pyreval-simple
pyreval
qr2-simple
qr2
qstar-simple
qstar
readnexus-simple
readnexus
readseq-simple
readseq
redata-simple
redata
remap-simple
remap
RepeatMasker-simple
RepeatMasker
repeats-simple
repeats
reputer-simple
reputer
restrict-simple
restrict
revseq-simple
revseq
rnadistance-simple
rnadistance
rnaeval-simple
rnaeval
rnafold-simple
rnafold
rnaga-simple
rnaga
rnaheat-simple
rnaheat
rnainverse-simple
rnainverse
rnapdist-simple
rnapdist
rnasubopt-simple
rnasubopt
sam2hmmer-simple
sam2hmmer
sampleseqs-simple
sampleseqs
saps-simple
saps
satellites-simple
satellites
scan_for_matches-simple
scan_for_matches
screen2h-simple
screen2h
seqboot-simple
seqboot
seqgen-simple
seqgen
seqinfo-simple
seqinfo
seqmatchall-simple
seqmatchall
seqsblast-simple
seqsblast
seqstat-simple
seqstat
seqtofeat-simple
seqtofeat
showfeat-simple
showfeat
showorf-simple
showorf
showseq-simple
showseq
shuffleseq-simple
shuffleseq
sigcleave-simple
sigcleave
silent-simple
silent
sorttrans-simple
sorttrans
splitter-simple
splitter
sreformat-simple
sreformat
stamp-simple
stamp
stretcher-simple
stretcher
stride-simple
stride
stssearch-simple
stssearch
supermatcher-simple
supermatcher
syco-simple
syco
tacg-simple
tacg
testalign-simple
testalign
textsearch-simple
textsearch
tfm-simple
tfm
tfscan-simple
tfscan
tipdate-simple
tipdate
tmap-simple
tmap
toto-simple
toto
transeq-simple
transeq
transform-simple
transform
treealign-simple
treealign
treetypedisplay-simple
treetypedisplay
trimseq-simple
trimseq
trnascan-simple
trnascan
vectorstrip-simple
vectorstrip
water-simple
water
weighbor-simple
weighbor
wise2-simple
wise2
wobble-simple
wobble
wordcount-simple
wordcount
wordmatch-simple
wordmatch
xblast-simple
xblast
xpound-simple
xpound